GgaEX6042567 @ galGal4
Exon Skipping
Gene
ENSGALG00000011099 | FAP
Description
seprase [Source:RefSeq peptide;Acc:NP_001180568]
Coordinates
chr7:20602663-20605705:+
Coord C1 exon
chr7:20602663-20602857
Coord A exon
chr7:20604827-20604881
Coord C2 exon
chr7:20605606-20605705
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTTTTTTTCCACAGGAA
3' ss Score
12.52
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTATGGAGGACCATGCAGTCAGAATGTAAAACACACATTTAGCATTAGCTGGATAACGTATCTTGCAAGCAAAGAGGGAATTATTGTTGCTCTAGTAGATGGCAGAGGAACAGCTTATCAAGGTGACAAGATTTTGCATGCAGTTTATCGAAGACTAGGAGTCTATGAAGTTGAGGACCAAATTTCAGCCGTGAA
Seq A exon
GAAATTTATAGAAATGGGTTTTATTGATGAGAAACGAATAGCAATATGGGGCTGG
Seq C2 exon
TCCTATGGTGGATATGTAACTTCTCTGGCACTTGGATCTGGCAGTGGAGTATTTAAATGTGGAATAGCTGTGGCTCCTGTTTCCAGTTGGGAATATTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099-'22-29,'22-28,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(25.5=80.3)
A:
PF0032616=Peptidase_S9=FE(8.7=100)
C2:
PF0032616=Peptidase_S9=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAGGAACAGCTTATCA
R:
ACTCCACTGCCAGATCCAAGT
Band lengths:
146-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]