MmuEX6101628 @ mm10
Exon Skipping
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62504506-62517714:-
Coord C1 exon
chr2:62517520-62517714
Coord A exon
chr2:62512386-62512440
Coord C2 exon
chr2:62504506-62504605
Length
55 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTCTTCCACTTCAGAAA
3' ss Score
8.63
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTATGGTGGTCCTTGCAGCCAGAGTGTTAAGTCTGTGTTTGCTGTTAATTGGATAACTTATCTCGCAAGTAAGGAGGGGATAGTCATTGCCCTGGTAGATGGTCGGGGCACTGCTTTCCAAGGTGACAAATTCCTGCATGCCGTGTATCGAAAACTGGGTGTATATGAAGTTGAGGACCAGCTCACAGCTGTCAG
Seq A exon
AAAATTCATAGAAATGGGTTTCATTGATGAAGAAAGAATAGCCATATGGGGCTGG
Seq C2 exon
TCCTACGGAGGTTATGTTTCATCCCTGGCCCTTGCATCTGGAACTGGTCTTTTCAAATGTGGCATAGCAGTGGCTCCAGTCTCCAGCTGGGAATATTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(25.0=78.8)
A:
PF0032616=Peptidase_S9=FE(16.4=100)
C2:
PF0032616=Peptidase_S9=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCTTTCCAAGGTGACA
R:
GACCAGTTCCAGATGCAAGGG
Band lengths:
137-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types