RnoEX0034888 @ rn6
Exon Skipping
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48471521-48484137:-
Coord C1 exon
chr3:48483943-48484137
Coord A exon
chr3:48479056-48479110
Coord C2 exon
chr3:48471521-48471620
Length
55 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTCTTTCACTTCAGAAA
3' ss Score
8.88
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTATGGTGGTCCCTGCAGCCAGAGTGTAAAGTCTGTATTCTCTGTTAATTGGATAACTTATCTTGCAAGTAAGGAGGGGATAGTCGTTGCCTTGGTAGATGGCCGGGGCACTGCTTTCCAAGGTGACAAATTCCTGCATGCCGTGTATCGAAAGCTGGGTGTGTATGAAGTTGAGGACCAGCTCACAGCTGTCAG
Seq A exon
AAAATTCATAGAAATGGGTTTCATTGATGAAGGAAGAATAGCCATATGGGGATGG
Seq C2 exon
TCCTACGGAGGTTATGTTTCATCCCTAGCCCTTGCGTCCGGAACTGGCCTTTTCAAATGTGGTATAGCAGTGGCTCCAGTCTCCAGCTGGGAATACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679-'25-21,'25-20,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(25.0=78.8)
A:
PF0032616=Peptidase_S9=FE(8.7=100)
C2:
PF0032616=Peptidase_S9=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCTTTCCAAGGTGACA
R:
TTGAAAAGGCCAGTTCCGGAC
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]