RnoEX0034889 @ rn6
Exon Skipping
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48470290-48479110:-
Coord C1 exon
chr3:48479056-48479110
Coord A exon
chr3:48471521-48471620
Coord C2 exon
chr3:48470290-48470354
Length
100 bp
Sequences
Splice sites
3' ss Seq
CAATAACAATGTCTCCACAGTCC
3' ss Score
5.81
5' ss Seq
ACGGTATGG
5' ss Score
8.47
Exon sequences
Seq C1 exon
AAAATTCATAGAAATGGGTTTCATTGATGAAGGAAGAATAGCCATATGGGGATGG
Seq A exon
TCCTACGGAGGTTATGTTTCATCCCTAGCCCTTGCGTCCGGAACTGGCCTTTTCAAATGTGGTATAGCAGTGGCTCCAGTCTCCAGCTGGGAATACTACG
Seq C2 exon
CCTCTATCTACACGGAGAGATTCATGGGCCTCCCAACAAAGGATGATAATCTTGAACACTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679-'26-22,'26-21,28-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(8.7=100)
A:
PF0032616=Peptidase_S9=FE(15.9=100)
C2:
PF0032616=Peptidase_S9=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATGGGTTTCATTGATGAAGGA
R:
AGTGTTCAAGATTATCATCCTTTGTT
Band lengths:
106-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]