DreEX0032074 @ danRer10
Exon Skipping
Gene
ENSDARG00000078468 | fap
Description
fibroblast activation protein, alpha [Source:ZFIN;Acc:ZDB-GENE-081104-439]
Coordinates
chr9:51723946-51727111:+
Coord C1 exon
chr9:51723946-51724000
Coord A exon
chr9:51726052-51726151
Coord C2 exon
chr9:51727053-51727111
Length
100 bp
Sequences
Splice sites
3' ss Seq
AACATTCTTCTTGATTACAGTCC
3' ss Score
5.16
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
AAAGTTCATTGAAATGGGTTTCATTGACAAGGACAGAATTGCGATGTGGGGTTGG
Seq A exon
TCCTATGGCGGTTATGTGACGTCTATGGCTCTGGGATCAGGAAGTGGGCTTTTCAAATGTGGAATTGCTGTGGCTCCTGTTGCAAAGTGGGAATATTATG
Seq C2 exon
ATGCCGTTTACACAGAGAGATACATGCATCGCCCTCAAGACAACTTTGAAAGTTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078468_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(8.8=100)
A:
PF0032616=Peptidase_S9=FE(16.1=100)
C2:
PF0032616=Peptidase_S9=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATGGGTTTCATTGACAAGGAC
R:
CTTTCAAAGTTGTCTTGAGGGCG
Band lengths:
98-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]