MmuEX0018611 @ mm9
Exon Skipping
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62341422-62350497:-
Coord C1 exon
chr2:62350443-62350497
Coord A exon
chr2:62342563-62342662
Coord C2 exon
chr2:62341422-62341486
Length
100 bp
Sequences
Splice sites
3' ss Seq
CAATAACAATGTCTCTACAGTCC
3' ss Score
4.68
5' ss Seq
ACGGTATGG
5' ss Score
8.47
Exon sequences
Seq C1 exon
AAAATTCATAGAAATGGGTTTCATTGATGAAGAAAGAATAGCCATATGGGGCTGG
Seq A exon
TCCTACGGAGGTTATGTTTCATCCCTGGCCCTTGCATCTGGAACTGGTCTTTTCAAATGTGGCATAGCAGTGGCTCCAGTCTCCAGCTGGGAATATTACG
Seq C2 exon
CATCTATCTACTCAGAGAGATTCATGGGCCTCCCAACAAAGGACGACAATCTCGAACACTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392-'24-27,'24-25,25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(16.4=100)
A:
PF0032616=Peptidase_S9=FE(15.9=100)
C2:
PF0032616=Peptidase_S9=PU(40.4=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATAGAAATGGGTTTCATTGATGAA
R:
TTGTCGTCCTTTGTTGGGAGG
Band lengths:
99-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: