GgaEX1024321 @ galGal4
Exon Skipping
Gene
ENSGALG00000011099 | FAP
Description
seprase [Source:RefSeq peptide;Acc:NP_001180568]
Coordinates
chr7:20604827-20608815:+
Coord C1 exon
chr7:20604827-20604881
Coord A exon
chr7:20605606-20605705
Coord C2 exon
chr7:20608751-20608815
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGATTTCTTCCTAGTCC
3' ss Score
8.56
5' ss Seq
ACGGTATGG
5' ss Score
8.47
Exon sequences
Seq C1 exon
GAAATTTATAGAAATGGGTTTTATTGATGAGAAACGAATAGCAATATGGGGCTGG
Seq A exon
TCCTATGGTGGATATGTAACTTCTCTGGCACTTGGATCTGGCAGTGGAGTATTTAAATGTGGAATAGCTGTGGCTCCTGTTTCCAGTTGGGAATATTACG
Seq C2 exon
CATCTATCTACACAGAACGATTTATGGGTCTTCCTGTAGAGTCCGATAATCTTGAGCACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099-'24-30,'24-29,25-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(8.7=100)
A:
PF0032616=Peptidase_S9=FE(15.9=100)
C2:
PF0032616=Peptidase_S9=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGGGTTTTATTGATGAGAAACG
R:
TAGTGCTCAAGATTATCGGACTCT
Band lengths:
106-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]