HsaEX6016260 @ hg38
Exon Skipping
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl peptidase 4 [Source:HGNC Symbol;Acc:HGNC:3009]
Coordinates
chr2:162008562-162011987:-
Coord C1 exon
chr2:162011793-162011987
Coord A exon
chr2:162009241-162009295
Coord C2 exon
chr2:162008562-162008661
Length
55 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTCCTTGTGTTTTAGACA
3' ss Score
10.32
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTATGCAGGCCCATGTAGTCAAAAAGCAGACACTGTCTTCAGACTGAACTGGGCCACTTACCTTGCAAGCACAGAAAACATTATAGTAGCTAGCTTTGATGGCAGAGGAAGTGGTTACCAAGGAGATAAGATCATGCATGCAATCAACAGAAGACTGGGAACATTTGAAGTTGAAGATCAAATTGAAGCAGCCAG
Seq A exon
ACAATTTTCAAAAATGGGATTTGTGGACAACAAACGAATTGCAATTTGGGGCTGG
Seq C2 exon
TCATATGGAGGGTACGTAACCTCAATGGTCCTGGGATCGGGAAGTGGCGTGTTCAAGTGTGGAATAGCCGTGGCGCCTGTATCCCGGTGGGAGTACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635-'42-36,'42-35,43-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(25.1=78.8)
A:
PF0032616=Peptidase_S9=FE(8.7=100)
C2:
PF0032616=Peptidase_S9=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAGGAAGTGGTTACCA
R:
CTTCCCGATCCCAGGACCATT
Band lengths:
140-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains