GgaEX0016647 @ galGal3
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22741845-22744930:+
Coord C1 exon
chr7:22741845-22742039
Coord A exon
chr7:22742696-22742750
Coord C2 exon
chr7:22744831-22744930
Length
55 bp
Sequences
Splice sites
3' ss Seq
ATTATTCTGTTTGTTTTTAGAAC
3' ss Score
9.83
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTATGCAGGACCCTGTAGTCAGAAAGTAGATCATGTATTCCGGATTAACTGGGCTACGTACCTTGCCAGTACAGAGCAGATCATTGTGGCCAGCTTTGATGGCAGAGGAAGTGGGTACCAGGGGGATGAGATCATGCATGCAATAAACCGAAGACTGGGAACTTATGAAGTGGAAGATCAGATTTCAGCAGCCAG
Seq A exon
AACATTTTCTGAAATGAGCTTTGTTGATAAGGACAGAATAGCTATTTGGGGTTGG
Seq C2 exon
TCTTATGGGGGATATGTGACCTCCATGGTGCTTGGCTCTGGAAGCGGCGTGTTCAAGTGTGGAATAGCGGTTGCCCCTGTGTCACGTTGGCAATATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110-'24-33,'24-32,25-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(25.0=78.8)
A:
PF0032616=Peptidase_S9=FE(8.7=100)
C2:
PF0032616=Peptidase_S9=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGGCAGAGGAAGTGGGT
R:
CTTCCAGAGCCAAGCACCATG
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]