BtaEX0012073 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015238 | DSC3
Description
Bos taurus desmocollin 3 (DSC3), mRNA. [Source:RefSeq mRNA;Acc:NM_001178103]
Coordinates
chr24:26445545-26448151:+
Coord C1 exon
chr24:26445545-26445802
Coord A exon
chr24:26447717-26447759
Coord C2 exon
chr24:26447842-26448151
Length
43 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTTTGTATGTAGGAA
3' ss Score
8.41
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGTTCTGCCAATGGGTTTATGACCCAGACAGTCAACAACGCTAACCAGGGCTTTTGTGGCACTATGGGATCTGGAGTCAAAAACGGAGGGCAGGAAAGCATTGAAATGGTGAAAGGAGGACAGCAGACGCTGGAGTCGTGCCGCGGGGCTGGGCATCATCACACCCTGGACTCCTGCAGAGGAGGCACTATTGAGGTGGAGAATTCCAGATACACTTACTCCGAGTGGCAAAATTTCACTCAACCCCGTCTTGGTGAA
Seq A exon
GAATCCATTAGAGGACACACTGGTTAAAAATTAAACATAAAAG
Seq C2 exon
AAATTGCATCTGTGTAATCAGGACGAAGAGCACATGCCATCACAAGATTACGTCCTTACGTACAACTATGAAGGAAGAGGGTCTCCAGCCGGTTCTGTGGGTTGCTGCAGTGAAAAGCAGGAAGAAGACGGCCTTGACTTTTTAAATAATTTGGAAGCCAAATTTGCTGCCTTAGCAGAAACATGCACAAAGAGATAATGTTACAGTGCTACAATTAGATACGTCTTTGTCAGACATCATCTTTCTAAAAGAGATATTGTAAAATTCAATTTATTTCTATATATCTAGCAATATATAGATATTATGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015238_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=1.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=PU(47.2=68.6)
A:
NO
C2:
PF0104912=Cadherin_C=PD(51.2=97.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCACACCCTGGACTCCTG
R:
TGATGGCATGTGCTCTTCGTC
Band lengths:
145-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development