GgaEX0022205 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJD7]
Coordinates
chr2:105634159-105635364:-
Coord C1 exon
chr2:105635131-105635364
Coord A exon
chr2:105634442-105634487
Coord C2 exon
chr2:105634159-105634356
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTTTGTATGTAGGAA
3' ss Score
8.41
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATCACAATATAATTCCTCTACAAACTACTGATCAAGTAGGATCTGGAATAAAAACAGGAGATCAGCAAACATTTGAAATGGTAAAAGGAAGAGGGCATACCTTGGAATCAGTCAGAGGAGGTGGACATCAGACGCTGGGATCAGTCAAAGAAGGAGGAGGGCAGGCTATGGTGGACACGTGTAGATACTCCTACTCAGAATGGCATAATTTCACACATCCTCGTTTAGGAGAA
Seq A exon
GAATCCATTAGAGGACACACTCTGATTAAAAATTAATCAATGAAAG
Seq C2 exon
AAGGTGCATCTATGCAGACAGGATGAAGAACAGAAACATTCTGAAGATTATCTCCTTTCATATAACTATGAAGGAAAAGGATCCTTGGCTGGCTCTGTAGGCTGCTGCAGTGATCAGCATGAAGAAGAGGCACTTGACTTCTTAGATCAACTGGAACCCAAGTTTAGGACATTGGCAGAAACATGTATAAAAAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015140_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=1.000 C2=0.154
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=PU(40.5=57.7)
A:
NO
C2:
PF0104912=Cadherin_C=PD(57.7=97.0)
Main Inclusion Isoform:
ENSGALT00000024430fB2745
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGACGCTGGGATCAGTCA
R:
TCTGTTCTTCATCCTGTCTGCA
Band lengths:
141-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]