RnoEX0029920 @ rn6
Exon Skipping
Gene
ENSRNOG00000039969 | Dsc2
Description
desmocollin 2 [Source:RGD Symbol;Acc:1309426]
Coordinates
chr18:11826706-11829376:-
Coord C1 exon
chr18:11829116-11829376
Coord A exon
chr18:11828564-11828609
Coord C2 exon
chr18:11826706-11828477
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTCTACACATAGGAA
3' ss Score
7.57
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TATTCCGCAAATGGCTTCACAGCTCAAACTGCGGGAGCTTCTGGGCAGACAACATTCACAACCTTGGGAGCTGGAGTCAAAAGTACAGGGCAAGAGACCATTGAGATGGTAAAAGGAGGACAGCGCACACTGGACTCCCGCAGGGCGACCGGCTATCACCACCATACCATGGATCCTGGCAGGGGAGGGCATGTGGAGGTGGACAATTACAGATACACCTACTCTGAGTGGCACAATTTCACTCAGCCCCGACTTGGTGAG
Seq A exon
GAAACCATTAGAGGACACACTCTGATTAAAAATTAAACAGTGAAAG
Seq C2 exon
AAGGTGCAGTTTTGCCATGAGGATGACAACCAGAAGCTTGCCCAAGACTATGTCCTCACATACAACTATGAGGGAAAAGGCTCGGCTGCTGGCTCTGTGGGTTGCTGTAGCGACCTACAGGAAGAAGACGGGCTTGAGTTTTTGGACCATCTGGAGCCTAAATTTAGGACATTAGCAGAAGTATGTGCAAAGAGGTGAACGACTTCTAACAGGATAACGAAAACTAATGGATTTACTGCCTTGTCCTCCCTGCTTTTAACTGTAAACCAGGAGTTTTCAAAAACAGAAGATGTTATATTTGGGGCTCCCTCCGCCATCTACAGAGTCTCCATGGATATACACATTTACAGAGAAACGTTGTATATTAGTGCTCGGAAACCATTGCTCTCGAGTTTCAGTCACTTCTCTTTTACGGGTGTCCTCTCACATGGAAACTTAAGGAATTCTCATTACTGTTTACATTGGGTGTAATGACAGCAGCCAACTTAGAGTGCAATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039969_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=1.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=PU(46.3=65.5)
A:
NO
C2:
PF0104912=Cadherin_C=PD(52.0=97.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTACTCTGAGTGGCACA
R:
GCCGAGCCTTTTCCCTCATAG
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]