MmuEX0015710 @ mm10
Exon Skipping
Gene
ENSMUSG00000024331 | Dsc2
Description
desmocollin 2 [Source:MGI Symbol;Acc:MGI:103221]
Coordinates
chr18:20030633-20033322:-
Coord C1 exon
chr18:20033062-20033322
Coord A exon
chr18:20032490-20032535
Coord C2 exon
chr18:20030633-20032403
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTCTACACATAGGAA
3' ss Score
7.57
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TATTCCACAAACGGCTTGACAACTCAAACTATGGGAGCTTCTGGGCAGACAGCTTTCACCACCATGGGAACTGGAGTCAAAAGTGGAGGGCAAGAGACCATTGAGATGGTAAAAGGAGGGCAGCAGACTTTGGACTCACGCAGAGGGGCTGGCTATCATCACCATACCCTGGATCCTTGCAGGGGAGGACATGTGGAGGTGGACAACTACAGACACACTTACTCAGAGTGGTACAATTTCATTCAGCCCCGACTTGGTGAT
Seq A exon
GAAACCATTAGAGGACACACTCTGATTAAAAATTAAACAATAAAAG
Seq C2 exon
AAGGTACAGTTTTGCCATACGGATGACAACCAGAAGCTTGCTCAAGACTACGTCCTCACATACAACTATGAGGGAAAAGGCTCGGCTGCTGGCTCTGTGGGTTGCTGTAGTGACCTACAGGAAGAAGACGGGCTTGAGTTTTTGGACCATCTGGAGCCCAAATTTAGGACATTGGCAGAAGTATGTGCAAAGAGGTGAACGACTTCTAATAGGAAAACGAAAACTAATGGATTCACTGCCTTGCCCTCCCTGCTTTTCACTGTAAACCAGGAGTTTTCAAAAAACAGAAGATGTTATATTTGGGGCTCCCTCTCCTATCTCGGTCTGCAGAATCTCCATGCAAATGCACATTTACAGAGAAACTTTGCAATTAGTACTTGAAAACCATTATGCATGGATTTCAATTACTTCTTTTTTACCAGATGACATCTTAGGTGGAAACTTAAGGAAATTTGCATTACTGTTTACATTGGGTATAATGACAGCAGCCAACTTATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024331_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.335 A=0.818 C2=0.000
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=PU(45.9=64.4)
A:
NO
C2:
PF0104912=Cadherin_C=PD(52.5=97.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCATTCAGCCCCGACTTGG
R:
GGTCACTACAGCAACCCACAG
Band lengths:
140-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types