GgaEX0022205 @ galGal3
Exon Skipping
Gene
ENSGALG00000015140 | F1NJD7_CHICK
Description
NA
Coordinates
chr2:109109318-109110523:-
Coord C1 exon
chr2:109110290-109110523
Coord A exon
chr2:109109601-109109646
Coord C2 exon
chr2:109109318-109109515
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTTTGTATGTAGGAA
3' ss Score
8.41
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATCACAATATAATTCCTCTACAAACTACTGATCAAGTAGGATCTGGAATAAAAACAGGAGATCAGCAAACATTTGAAATGGTAAAAGGAAGAGGGCATACCTTGGAATCAGTCAGAGGAGGTGGACATCAGACGCTGGGATCAGTCAAAGAAGGAGGAGGGCAGGCTATGGTGGACACGTGTAGATACTCCTACTCAGAATGGCATAATTTCACACATCCTCGTTTAGGAGAA
Seq A exon
GAATCCATTAGAGGACACACTCTGATTAAAAATTAATCAATGAAAG
Seq C2 exon
AAGGTGCATCTATGCAGACAGGATGAAGAACAGAAACATTCTGAAGATTATCTCCTTTCATATAACTATGAAGGAAAAGGATCCTTGGCTGGCTCTGTAGGCTGCTGCAGTGATCAGCATGAAGAAGAGGCACTTGACTTCTTAGATCAACTGGAACCCAAGTTTAGGACATTGGCAGAAACATGTATAAAAAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015140-'16-16,'16-15,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=1.000 C2=0.154
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=PU(46.3=73.1)
A:
NO
C2:
PF0104912=Cadherin_C=PD(52.0=97.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGACGCTGGGATCAGTCA
R:
TCTGTTCTTCATCCTGTCTGCA
Band lengths:
141-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]