BtaEX0012071 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040584 | DSC2
Description
desmocollin 2 [Source:HGNC Symbol;Acc:HGNC:3036]
Coordinates
chr24:26375878-26377202:+
Coord C1 exon
chr24:26375878-26376168
Coord A exon
chr24:26376704-26376749
Coord C2 exon
chr24:26376838-26377202
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTTTATACGTAGGAA
3' ss Score
7.89
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TATTCCACAAATGATTTCACAACCCATGCTGTGGGTGGCTCCGCTCATGGAATTGGTGGCACCCTGGGATCCAGAGTGAAGAATGGAGGGCAGGAGACCATCGAGATGGTCAAAGGAGGGCACCAGACCATGGAGTCCTGCCAGGAAACCGGGCATCATCACACCCTGGAACGGTGTAAGGAAGGTGGACAGCACACTCTGGATTCCTGTAGGGGAGGACCAGTAGCAACCGACAACTGCAAATACACGTACTCCGAGTGGTATACTTACACTCAGCCCCGTCTTGGTGAA
Seq A exon
GAATCCATTAGAGGACACACTCTGGTTAAAAATTAAACAATGAAAG
Seq C2 exon
AAGGTCCAGCAGTGTGATCAGGATAACACCCATATGCAAGCTCAAGACTACGTCCTGACCTATAACTACGAAGGAAGAGGATCGGCAGCTGGATCTGTGGGCTGTTGCAGCGAACGACAAGAAGAAGATGGGCTTGAATTTTTGGATCATCTGGGACCCAAATTTAGGACACTTGCGGAAACATGCATGAAGAGATGAGTGCCTTCTAGATGGTCTACAAAAGCCAATGGGTTTATCGTCTTTTTTTGTTTTTATAAGCTAAGATTTTTTTTAAACATAGAAGATGCTATATTGGGGGCTTTTCCCCTTTATTTTGTTGGGATCTCTTTAGCCAAATGTGCATTCACCGAGGGATGCTGTAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040584_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=1.000 C2=0.123
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=PU(47.2=60.8)
A:
NO
C2:
PF0104912=Cadherin_C=PD(51.2=97.0)
Main Inclusion Isoform:
ENSBTAT00000011306fB2277
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGTAAGGAAGGTGGACA
R:
TCCTGATCACACTGCTGGACC
Band lengths:
144-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development