RnoEX0029922 @ rn6
Exon Skipping
Gene
ENSRNOG00000017159 | Dsc3
Description
desmocollin 3 [Source:RGD Symbol;Acc:1311782]
Coordinates
chr18:11755446-11758614:-
Coord C1 exon
chr18:11758360-11758614
Coord A exon
chr18:11755723-11755764
Coord C2 exon
chr18:11755446-11755643
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTTTGTGTGTAGGAC
3' ss Score
9.12
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGCTCTGCCAATGGATTCACCACCCACACTGCCAACAACTCCAGCCAAGGCTTCTGTGGCACAATGGGGTCAGGAATGAGGAACGGTGGGCAGGAGACCATCGAGATGATGAAAGGCCACCAGACCTTGGACTCCTGCCGTGTTGCTGGGCATCACCACACCCTGGACTCCTGCAGGGGAGGACACATGGAAACCGACAACTGCAGATACACGTACTCAGAGTGGCACAGCTTCACTCAGCCCCGACTCGGCGAA
Seq A exon
GACTCCTAGAGGACACACTGGTTAAAAAATTAAACATAAAAG
Seq C2 exon
AAATTGCATGTGTGTAATCAGAACGAAGACCACATCCCATCTCAAGACTATGTCCTCACCTATAACTACGAAGGCAGGGGATCTCCAGCCGGTTCTGTAGGTTGCTGCAGTGAAAAGCAGGAAGAAGAGGGACTCGACTTTTTAAACAATTTGGAGCCCAAATTTCTTACATTGGCAGAAACATGTACAAAGAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017159_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=1.000 C2=0.092
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=PU(46.8=68.2)
A:
NO
C2:
PF0104912=Cadherin_C=PD(51.6=97.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACAACTGCAGATACACGT
R:
GAGATCCCCTGCCTTCGTAGT
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]