BtaEX0012094 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3611711-3613143:+
Coord C1 exon
chr23:3611711-3611870
Coord A exon
chr23:3612070-3612396
Coord C2 exon
chr23:3613059-3613143
Length
327 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTAAACCTCGTTTAGGCG
3' ss Score
6.01
5' ss Seq
CGGGTATTT
5' ss Score
4.84
Exon sequences
Seq C1 exon
GAACCGTCAGCTGGAAGGTATCTCCGTGGTAGCACAGCAGTTTCACGAAACCTTAGAGCCGCTGAACGAGTGGCTGTCGACCACAGAGAAGAGGCTGGCGAACTGCGAGCCTGTTGGAACCCAGGCGTCCAAGCTAGAGGAGCAGATTGAGCAGCACAAA
Seq A exon
GCGTTAGAAGATGACATCCTGCATCACAATAAGCATTTACACCAGACTGTTAGCATTGGCCAGTCTTTAAAGGTTTTGAGCTCCAGGGAGGATAAAGATATGGTGCAGAGTAAACTAGACTCCTCCCAAGTGTGGTACATTGAGATTCAAGAGAAAAGCCACAGCAGGTCTGAGCTCCTGCAGCAGGCTCTGTGTAATGCTAAGATTTTTGGGGAAGATGAAGTGGAGCTGATGAACTGGCTGAGTGAAGTGCATGACAAGCTGAGGCGGCTCTCGGTCCAGGACTCCAGCCCCGAGGGGCTGTGGACACAGCAGGCTGAGTTGCGG
Seq C2 exon
GTTCTTCAAGAGGACATCCAGCTTAGAAAACAAAATGTAGACCAGGCTCTGCTGAATGGCCTGGAACTACTTAAACGAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=11.1),PF0043516=Spectrin=PU(40.6=79.6)
A:
PF0043516=Spectrin=PD(57.5=56.0),PF0043516=Spectrin=PU(38.2=35.8)
C2:
PF0043516=Spectrin=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCAGCTGGAAGGTATCTC
R:
TGTTCGTTTAAGTAGTTCCAGGCC
Band lengths:
238-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development