RnoEX0030041 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:37959006-37960258:-
Coord C1 exon
chr9:37960099-37960258
Coord A exon
chr9:37959567-37959893
Coord C2 exon
chr9:37959006-37959090
Length
327 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTGAACTTCGTTTAGGTA
3' ss Score
7.61
5' ss Seq
AGGGTACCT
5' ss Score
4.24
Exon sequences
Seq C1 exon
GAACCGTCAACTGGAAGGTATCTCTGTGGTAGCTCAGGAGTTTCATGAGACCTTGGAGCCCCTGAATGAGTGGCTCACAGCCGTAGAAAAAAAGCTGGCCAACTCCGAACCCATAGGAACCCAGGCACCCAAGCTGGAGGAACAGATTGCACAGCACAAA
Seq A exon
GTATTAGAAGATGACATCACCAGTCACAACAAACAGTTACACCAGGCCGTTAGCATCGGCCAGTCCTTAAAGGTCCTGAGCTCCAGGGAGGACAAAGATCTGGTGCAGAGTAAGCTAGACTCCTTGCAAGTGTGGTACTTTGAGATTCAAGAGAAAAGTCACAGCAGGTCTGAGCTCCTCCAGCAGGCCCTGTGCAATGCTAAGATCTTTGGGGAAGATGAAGTTGAGCTGATGAACTGGCTGAACGAAGCACATGGCAAGCTGAGTAAGCTGTCAGTCCAGGATCACAGCACAGAGGCGCTGTGGAGACAGCGGGCCGAACTCAGG
Seq C2 exon
GCTCTACAAGAAGACATTCTCCTCAGGAAACAGAGTGTAGATCAGGCACTGCTGAACGGCTTAGAACTGCTCAAACAAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(40.6=79.6)
A:
PF0043516=Spectrin=PD(57.5=56.0),PF0043516=Spectrin=PU(38.2=35.8)
C2:
PF0043516=Spectrin=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCAACTGGAAGGTATCTCTG
R:
TGTGGTTTGTTTGAGCAGTTCT
Band lengths:
241-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]