DreEX0004501 @ danRer10
Exon Skipping
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1502887-1507793:+
Coord C1 exon
chr13:1502887-1503046
Coord A exon
chr13:1505837-1506163
Coord C2 exon
chr13:1507709-1507793
Length
327 bp
Sequences
Splice sites
3' ss Seq
TGCGTTTGTGGCTAAATCAGGCT
3' ss Score
3.23
5' ss Seq
CTGGTACTG
5' ss Score
4.41
Exon sequences
Seq C1 exon
ACACAAGCAGCTGGAGAATATTTCGGTGGTGGCTCAGCAATTTCACGAGACCCTGGAGCCGCTGACGGAATGGCTGACGGCGACCGAAAAGAGACTCGCAAACTCGGAGCCTATCGGCACACAGACGTCCAAACTAGAGGAGCAGATCTCACAGCATAAG
Seq A exon
GCTTTAGAGGAGGAGGTTTTGGGCCGGGGTAAGGTGTTGTACCAGGCCATGAGCCTGGGTCAGTCTCTGCGGACGCTGGGTTGTGTGGATGATAAAGAGACGGTGCAGGTAAAGCTGGAAAACACACAGCGCAGCTTTCTAGAGCTCCAGGAGCTGTGCAGACAGAAGGATGAGCTACTGAGGCAGGCCCGGGCCAATGCGCAGCTCTTCGGAGAGGATGAAGTGGCTCTGATGACGTGGCTGGATGAAGTGCACGCAAAACTGAGCGACGTCTCGGTTCAGGATTACACCCCGGCGGTGCTGGAAAAACAGCACGCAGAGCAGCTG
Seq C2 exon
GCTCTTCATGAAGACATTGAGTTGAGGAAACAAAACATCGAACAGGCCATCCTCAACGGCTTAGAACTGCTCAAACAGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(40.6=79.6)
A:
PF0043516=Spectrin=PD(57.5=56.0),PF0043516=Spectrin=PU(41.1=40.4)
C2:
PF0043516=Spectrin=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGCAGCTGGAGAATATTTCG
R:
TCTGTTTGAGCAGTTCTAAGCCG
Band lengths:
238-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]