GgaEX0024011 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89874706-89875691:+
Coord C1 exon
chr3:89874706-89874865
Coord A exon
chr3:89875113-89875439
Coord C2 exon
chr3:89875607-89875691
Length
327 bp
Sequences
Splice sites
3' ss Seq
CTTCATTATTTAAAAAATAGGCC
3' ss Score
3.96
5' ss Seq
CTGGTATTT
5' ss Score
3.5
Exon sequences
Seq C1 exon
GAACCGTCAGTTGGAAGGCATCTCAGTGGTAGCACAGCAGTTTCATGAAGCTCTGGAGCCACTGGTGGAGTGGCTGTCGGCCACAGAGAAGAGACTTGCAAATGCTGAACCCATTGGAACACAGGCTTCCAAACTGCAACAGCAGATTTCTCAGCATAAA
Seq A exon
GCCCTAGAAGATGATGTCCTAGCTCACAATAAGAGTTTGCTTCAGGCCATTAGCATTGGTCAGTCTCTAAAGACTATGAGCTCCAGGGAAGATAAAGATATGGTGCAGGAAAAGCTAGATTCTTCTCAGGCCCGATACATTGAGATTCAAGAGAAGAGCAACAGCAGGTCTGAACTTCTACAGCAAGCGTACTGCAATGCTCAGATTTTTGGGGAGGACGAAGTTGAGTTGATGAACTGGCTGAATGAAGTCCATGATAAACTGAGCAAGTTGTCAGTCCAAGATTGCAACACAGAATTGCTTGAGAAACAGCACTCTGAACTACTG
Seq C2 exon
GAGCTTCAGGAGGAGATTCTTCTCAGAAAACAAAATGTCGATTTGGCTATACAAAATGGCTTAGAGCTTCTCAAACAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(40.6=79.6)
A:
PF0043516=Spectrin=PD(57.5=56.0)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCAGTTGGAAGGCATCTC
R:
TGTTTGTTTGAGAAGCTCTAAGCCA
Band lengths:
238-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]