BtaEX0012227 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29142752-29147209:+
Coord C1 exon
chr16:29142752-29142915
Coord A exon
chr16:29146439-29146585
Coord C2 exon
chr16:29146979-29147209
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCACCTCTCTTTGTTCTTAGGGA
3' ss Score
11.1
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
CCTTTCTTATCACTGTGCTTCAAGACTATGGACGGTCCCAAGGAGTCTCTACAGATGCCCTGACTTTTACCCACCATGTGATCTCGGACACCACCGACGTCAAAGACAAGGAGTTCTCCATAATCATCCAGAAGAAACTCAACATAGTCAGGAGAGCCTTTAAG
Seq A exon
GGAACAGACCCCACACATGTTGGAGTTCACGTCTTTGGTTTATTCATTGAGGGGGCAAGGTGGAATCACAAAGAAAAAATACTAGAAGACTCGTTACCTTGTGAGATATGTTGTGATTTTCCTGAAATATACTTCTTGCCAACAAAG
Seq C2 exon
ATTTCTACTGAAAGATCAACTGTGTCTAAGCAGACAGAGCCAGAACTCTATACTTTTGAATGCCCGGTTTACCAGACACCTGAGAGGTCGAGTATTTTGACAGCTGCTGGTTTATCCTCAAACTTTTTAACATCTGTGTACTTATCCACAAAGAAACCTCCTAGTCACTGGATCACAATGCAGGTTGCACTGCTGTGTGAGGAGAATGAAAAATAAACTTCCTTAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(18.9=100)
A:
PF0302810=Dynein_heavy=FE(25.9=100)
C2:
PF0302810=Dynein_heavy=PD(35.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGACGTCAAAGACAAGGA
R:
ACCTGCATTGTGATCCAGTGAC
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development