HsaEX6036985 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225579993-225586971:+
Coord C1 exon
chr1:225579993-225580153
Coord A exon
chr1:225586222-225586368
Coord C2 exon
chr1:225586756-225586971
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCACCTCTCTTCCATCTTAGGGC
3' ss Score
11.04
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
CCTTTCTTGCTGCTGTGCTTCAAGACTATGGGAGGTCCCGAGGAATCGCTGTGGATGCCCTCACCTTCACCCACCATGTGATTTCCAACACCACTGACAAGGATGAGAAGTTCTCCGTATTTATGCCAAAGAAACTCAACATAGTCAGGAGAGCGTTTAAG
Seq A exon
GGCTCAGCTTCCTCTCACACTGGAGTTTACATTTTTGGTTTATTCATCGAGGGGGCAAGATGGAATCGTGAACAGAAAATACTGGAAGACTCGCTGCCTCTGGAGATGTGCTGTGATTTTCCCGACATATACTTTTTGCCAACAAAG
Seq C2 exon
ATTTCTACCAAAACACCAAATGCTTCCAACCAGACAGATTCAGAACTCTATGCTTTTGAATGCCCAGTTTACCAGACACCTGAGAGGTCAAGAATTTTGGCAACTACCGGTTTACCAACAAACTTTTTAACATCAGTGTATTTATCAACGAAGAAACCTCCTAGTCACTGGATCACAATGCGGGTTGCATTGCTTTGTGAGAAGAATGAAAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'116-123,'116-122,118-123=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(26.2=100)
A:
PF0302810=Dynein_heavy=FE(23.8=100)
C2:
PF0302810=Dynein_heavy=PD(32.5=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCTTGCTGCTGTGCTTC
R:
CAGGTGTCTGGTAAACTGGGC
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)