MmuEX1008679 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181804958-181814741:+
Coord C1 exon
chr1:181804958-181805070
Coord A exon
chr1:181814042-181814191
Coord C2 exon
chr1:181814510-181814741
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCCTCTCTCATCAGCAA
3' ss Score
9.27
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AAGAACGCCTACAAGTCCTGCAAGCCCCTGAGCATCTGGGTGAGCAACCTCATCCAGAGGGTGAACTTCTTCAACACCTGGGCCAAAGTGGCCTACACAGCCATCCACCATCG
Seq A exon
CAACACCAGGACCACTCTCCCAAAGGAGTTTACATTTTTGGTTTATTCATGGAGGGAGCACGATGGGATCCTGAGCAGGAAGTGCTGGAAGACTCACTGCCCAGTCAGCTATGCTGTGAATTTCCCGACATACTCTTTTTGCCAACAAAG
Seq C2 exon
ATTACTGAACCGTCGGCCTCCCAGGATTCTGACCAGACAGCCTCAGACCTGCAAACCTTTGAGTGCCCAGTCTACTACACGCCCGAGAGGTCAAGAAACATGATTGGCTTACCAACAACCGTGCTAACCTCAGTGCACTTACCCACGAAGAAACCTCCCAGTCACTGGATCACCATGCAGGTTGCACTGCTGTGTGAGAAGAATGAGTGAATAAACACCCAGAGCGAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369_MULTIEX5-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.131
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.8=100)
A:
PF0302810=Dynein_heavy=FE(38.8=100)
C2:
PF0302810=Dynein_heavy=PD(51.2=93.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCCTACAAGTCCTGCAAG
R:
AAGTGCACTGAGGTTAGCACG
Band lengths:
250-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types