HsaEX6036985 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225392291-225399269:+
Coord C1 exon
chr1:225392291-225392451
Coord A exon
chr1:225398520-225398666
Coord C2 exon
chr1:225399054-225399269
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCACCTCTCTTCCATCTTAGGGC
3' ss Score
11.04
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
CCTTTCTTGCTGCTGTGCTTCAAGACTATGGGAGGTCCCGAGGAATCGCTGTGGATGCCCTCACCTTCACCCACCATGTGATTTCCAACACCACTGACAAGGATGAGAAGTTCTCCGTATTTATGCCAAAGAAACTCAACATAGTCAGGAGAGCGTTTAAG
Seq A exon
GGCTCAGCTTCCTCTCACACTGGAGTTTACATTTTTGGTTTATTCATCGAGGGGGCAAGATGGAATCGTGAACAGAAAATACTGGAAGACTCGCTGCCTCTGGAGATGTGCTGTGATTTTCCCGACATATACTTTTTGCCAACAAAG
Seq C2 exon
ATTTCTACCAAAACACCAAATGCTTCCAACCAGACAGATTCAGAACTCTATGCTTTTGAATGCCCAGTTTACCAGACACCTGAGAGGTCAAGAATTTTGGCAACTACCGGTTTACCAACAAACTTTTTAACATCAGTGTATTTATCAACGAAGAAACCTCCTAGTCACTGGATCACAATGCGGGTTGCATTGCTTTGTGAGAAGAATGAAAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'141-188,'141-187,147-188=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(26.2=100)
A:
PF0302810=Dynein_heavy=FE(23.8=100)
C2:
PF0302810=Dynein_heavy=PD(32.5=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCTTGCTGCTGTGCTTC
R:
CAGGTGTCTGGTAAACTGGGC
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains