BtaEX0012561 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105459764-105464033:-
Coord C1 exon
chr11:105463888-105464033
Coord A exon
chr11:105460606-105460749
Coord C2 exon
chr11:105459764-105459990
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCGGTCTCTCCCGATTGCAGCTG
3' ss Score
9.51
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCTGGCCAACGGTCCTGATGCAGGCGAGACGGATGGCCTCCAGGAGGTGCCCCTCTGCAGCTGCCGGATGGAGACCCCAAAGAGCCGGGAGATCACCACTCTGGCCAACAACCAGTGCATGGCCACAGAGAGTGTGGACCACCAG
Seq A exon
CTGGGCAGGTGCACGAACAGCGTGGTGAAGCATGAGCTGATGCGTCCGTCCAGCAAGGCACCGCTGCTGGTGCTGTGTGAGGACCACCGGGGCCGGATGGTGAAGCACCAGTGCTGCCCCGGCTGCGGCTACTTCTGCACGGCC
Seq C2 exon
GGTAATTTTATGGAATGTCAGCCTGAGAGCAGCATTTCTCATCGTTTCCACAAAGCCTGTGCCTCTCGAGTCAATAATGCCAGCTACTGTCCCCACTGTGGGGAGGAGACCTCCAAGGCCAAAGAGGTGACCATTGCAAAGGCAGACACGACGTCCACGGTGACCCTGGCCCCTGGGCAGGAGAAGAGCTGTGCAGCAGAGGGCAGGGCCGACACCACCACGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148_MULTIEX1-8/14=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCACTCTGGCCAACAAC
R:
CTGCACAGCTCTTCTCCTGC
Band lengths:
250-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development