GgaEX1021837 @ galGal4
Exon Skipping
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2051505-2056201:+
Coord C1 exon
chr17:2051505-2051650
Coord A exon
chr17:2054308-2054451
Coord C2 exon
chr17:2055975-2056201
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTAATTTCTCCTGTTCCAGCTG
3' ss Score
9.21
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GTCTTTCCAATGGCCCTGAAGCAATGGAAGTAGATGGTCTCCAGGAGGTTCCCCTCTGTAGCTGTCGAATGGAAACCCCCAAAAGCAGAGAGATCACCACGCTAGCCAACAACCAGTGCATGGCCACCGAGAGTGTGGATAATGAG
Seq A exon
CTGGGCCGATGCACAAACAGTGTGGTTAAGTATGAACTGATGCGCCCGTCTAACAAAGTCCAGCTTTTGGTGCTGTGTGAGGACCATAGAGGGAGGATGGTGAAACACCAGTGTTGCCCTGGCTGTGGATACTTTTGCACTGCA
Seq C2 exon
GGCACTTTCATGGAGTGTCAGCCTGAGAGCAGCATCTCCCACCGTTTCCACAAGAGCTGTGCCTCCCAGGTCAACGACACGAGCTACTGCCCACACTGCGGGGAAGATGCCTCCAAGGCAAAGGAGGTGACAATAGCAAAAGCAGACACGACTTCGACAGTGTCGCTGACCTACGAGCAGCAGAAACCAGCAGCAGTGGAGGGAAGGGCTGACACCACGACAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.461 A=0.000 C2=0.532
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACCACGCTAGCCAACAA
R:
GGTTTCTGCTGCTCGTAGGTC
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]