GgaINT1012135 @ galGal4
Intron Retention
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2051505-2056201:+
Coord C1 exon
chr17:2051505-2051650
Coord A exon
chr17:2051651-2055974
Coord C2 exon
chr17:2055975-2056201
Length
4324 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTTCTCTGTAATTTTTTTAGGGC
3' ss Score
10.55
Exon sequences
Seq C1 exon
GTCTTTCCAATGGCCCTGAAGCAATGGAAGTAGATGGTCTCCAGGAGGTTCCCCTCTGTAGCTGTCGAATGGAAACCCCCAAAAGCAGAGAGATCACCACGCTAGCCAACAACCAGTGCATGGCCACCGAGAGTGTGGATAATGAG
Seq A exon
GTAGGAACCTGTCTTTCAGCTTCTTGCAGACTTTTTTTTCCTGAGGACAGAGACATAAAGAGACAAAGCCGTGCCAGGAGCATGCATCAGGTCACGCAGACGCTCTGCAACATGCTAGATTGGGAGCCCATTGGTGTGGGCATGGTGGGGCATACACCTCCCTCCAGCACTGTGCATGTGTCGCACACTAGGGTTAAAGCCACTCCAAAGTGAGTAGGTGCAGTCTGCAGGGCTAGCTGGAGAGGCACTGGGTGAATCTCCTGCTTGTCCTGGCTTGTGTAGCTGGATCAACTGGATGTAACAGTCACACTTCAGGCTAAGTGGGTTTAAATACCTTAGTGTGCATCAAAGTGAGAGAATCCAATGAGGGGAAGCTTGGAGCTGGTTCCCTTGACTACAAAGGAGCTGATGCAGACCTTTCCGTAGCCAGCTCTTGAGTTTCTGGAACTTGGCATGCCTCCCACCAGCCCTCTCCTCTGGCCCTCCACTTTCCTCCTCCCCCCAAGAGGCTTCTGTTACAAAGCTTCCCATGTCCTGGCAGTCCTGCACATCCTCTGTGGCTGGCTGGCTGGAAACATTGCACTTGATGCCTCCAAATTGATCACAGCTGGGCTAGTTGGGCTCTGCTTGGTTCCGAGAAGGTGGAATTAAGTGGCAAAAGTGAATCCCTCTTAGAGTCTGGAAAGGAAGACTTCGTGACAGAATAAACTCAGGAGATGCTCCTTACTCTGGAAGAAACTGGCATTTCTTTGGCGCTTCAGCTGAGCTGCAGCCATGCTGCAGTGCTCTGATATTTACTGGTAGAAGGACAGGGAGTCACAGTACTCCTGGTTCTTCTGGAGGATCACAGTACAAGGATGGATAGAGGGAGGAAGGGGTAATCACATTTACAGCCCAACTCTACTTCTGTTAGTACGTGCTGGTACCTATAGAGAAAGGAATTTCACTAGCATGACAAAGTTGATAGATTAAGAAGAGAATGCCCTGGAGACTTGCAGGGGAGAGGGTTCTCCAGGGTTTCTAAATAAATAAAAAGTGTACAGAAGAGTTCCTTCTGACAGTTCTCTCCCCAGATAAATCAGAGAAAGGAATAGTGAAGGCCATGCATTCTGTTAGATTCGTTTTGGTAATGGGATAAGTGACTCATAGATGTGGTAAGGATATTACATGTATGAATAGTGGGTTCTCTAGACTGTCATGTCCTTGGATAATGTTATAAATAGTTAGGAGCACCGTGCTGTGCTCTCTAATGGCTGGAAAATAGCAATTAATCATTTTGTACTATTTTAGACTTTCTAACAAATAATATGTTGTGACAGAACGATGCAGGGACTTCCTTACACAGACGGTGCAGCTTCTCACGCCTTTATCAAATTTCCTCCACTCATAAATAGAAATCAATGAACTGGTCCTCTTCTGCAGCCCCTGGGGTCTGTGTGCTAGCAGTGATCACTCTAGGCAAGTTGTCACAACCACAGGTAGGCTTTGCAGCTGGAGTTTGGGTAAGGTGGGTCAGAGATGCTGAGGGAGAAGAGCTCAGGTTAAAAAGTTCTCTTTTTTTTTCCTGTGGGTGTGTTGATTGTAGGAGAAATGGAGTTTAAAATAAATCAGAGAGGGAGTTTAGTTTTACTGAGAAAAAGCGGTGAATCAAACCTCAGCTATAGAGCAGGAGGGGCAGCCTGCAAGTGATGAGCAGACACTGTGTTCCTTATGGACTGCTCTGGTCATGGAGGCAGAGTGCAGTACACCACGCTCAGATTCTGGTAGGGGTGTTTCCTCCTATGAGCTTTTCATGTCTATGTCTCTATGCTGGAAATGTCCTTTGCCAAACATTTGGGGAAAGCAAGGTTTTCATCTGGAGGGAGTTAGAGAACCCAAATGATGTTGCACCACGCTGGCAGGTGGCAACCAGGATGTGGAAGGCTTACAGATGTACGCACAGGGGTGGCAGAAGGAAGCCCCATTCTTTCTGGCACAGCAGAGGGAATAACACTGCTGGGAAGAGCCCCGCTCATGGAGCCTGCTGTCACTGACAGAGCAAGGTGGTACGAGAGAAGACAGCTCTTAAGCCCAAAATTATACACTGGTGAAATGTTTCAGAAAACGTGCTCAAAAGTCTGACTGGAGTTGAGCTCTCATGAACGACTGGCTATTCATCCCTGTGGTCTGGGCAGGGGCCAGTGCTGGAACCAGTACAGACGATAACATAGCTGGCAATGAAGAGCGATTATTTTTCCCTTTATCTTCCTGTGACTTGTACTTTTGAACAGTAACAAGATTTAGTGCGTATGGTCTTGTTCTCTTGGTCACTGACACCCGCTCTCCCTGGCAAAAGCAGAGAGTGTTTTGTGAGTCAGGCCCCTGGGACTGCCCCCTCTGTGGCTGCTTGGCTGTTGCGTATTTCCAGTTATGATTTTTCTTGCAAGGAACAAATGACTCCGGTCCACATGCATGTTAGTTAGTAAATGATGCATTTCTTCCTGTGAGAGCAGCTTTCACAGCTTCCTGCTGCACTGCTAATGCTATCTGGCACACATCTGAATTACTGTGAAAAAGCCAGGGCTCATCAAGGCAGTGTGCAAGATCTTCCTCCGCACAAGCACAGAGAGTGTTTTGGTCTCCAGTAATTTCATTTCCTTTAATTTCTCCTGTTCCAGCTGGGCCGATGCACAAACAGTGTGGTTAAGTATGAACTGATGCGCCCGTCTAACAAAGTCCAGCTTTTGGTGCTGTGTGAGGACCATAGAGGGAGGATGGTGAAACACCAGTGTTGCCCTGGCTGTGGATACTTTTGCACTGCAGTAAGTCCGTGCTCTCAATCTAGGGAAGGGGGTACTTGTCGCAGTAGCTGGAAGAGGTGCAGGTGGAGATTTACCCAAAGGGGTTTACTGGCTTCCTGGCATAAGCTCCACCTCGTTCCACAGCACATCAGATGGTGTTTTCAACAGTAATGTGTGTGAGGGTAGCTGCAATGCTCACCTGTAGCTTCCTGGAGACCCCAAGGGGTGTTGCCAAAGGGGTGGAAGTCATACCTTTGGAATTTTTTTGGAACACTGTTTGTTTTTTTTCTTCCTCTGTACAGTCAATCACATCACAAATGGTGTTAGCCTCGTTCTTGAGAGAGTCTGCATACAGGAGTGGGGTTGTGTCCCCCGTGCCACTCACAGGGGTTTAGATGGGGAACCTGAGCGATGGCACTGGAACAAGGCAGTGTTTGAGATCTCCTGCTCCTTCTTCCACCTCTGCCACTGAGGTTTTAATAGCGTTGGCCCAGTGCTTTGAGCCATCGGTGTCCTTGTTTCCTTGCTGGTGAAACACTTGTTGAGGGCCTCCTGGGGTGATAGGGTGGGTTAGTTGTCTGATGTTAGCGTTCTTTAAGATGACTCAATGAAAGAAGCTAGACTAGTCTCACCATTATTGTAATTACAATTATTGTAATTGTAATAAATGGAACCGTCCCGAGTCTTCATGCTGAGTCAAAGATCATTTAAAAGATAAAATCCTCAAAACATTTGAAGGCATTTTGCTATGCTATTTCTTGGGAGGACCGTGAATCCAGGAGAAGAGTGGGTTTTAACTAACTTTTCCTTAATGCTGTTACATCTCTGAGTGACCTCATAGTTCATAAAGGTGAATCTGGCAGTGTTTGTCTGTGTTATCAGTCACTAATAACACAGAGCACGGTAGGGCTTTAGGTAGCACTGATATCACAGAACAGTGACTTCTGGGGTGCAGTTCAGCTTAGAATCACCAAGGTTGGAAAAGCTTGGAGGACTTTGCTGAAAAGAGAAGATAATTTGTAGGAAGGTGGCTCTCATCTGTCAGCAGATGGGGTTAAACAGCATACAGGGCTGTTCCAGACAGAGAAGTTGCATGCTTTGGGTTACACTGGGGTTGACAGCTGTTGAAATTGTATTATTGTTGTTCCTTGAATGGTTTGCGTGCAGATGTGTTTGGCAGTTTCAGTGTTGACTGGTTTGAAGTTTTCTTTTCCAGTATTGGGAGCGTCCTTACAGTACACTGGCACTTCTAGAAACGTAAGCAAGAACCTCAAGTGTTAGAGCTGGAAAATGGGACTTTGTGGTTCTGTTTCCCACGTGCAATTAAAAAACTTGCTTTGCAGTTCCTAACCAAGTGAGTTTTTTCCCATTACCTTGGTTTTGTTCTCTTCTAAAGAAGTGGCAGTGCTTGCTTACTGTACTGGAAGCGCGAGGGACAAGAGTGGTCATGAATGATGTATTTAAGAGCTCTGCGGATGAAGCATGCGGAAGGGGTAAGGAACGTAGTGACCACGGTGTGAATGTCTTCTCTGTAATTTTTTTAG
Seq C2 exon
GGCACTTTCATGGAGTGTCAGCCTGAGAGCAGCATCTCCCACCGTTTCCACAAGAGCTGTGCCTCCCAGGTCAACGACACGAGCTACTGCCCACACTGCGGGGAAGATGCCTCCAAGGCAAAGGAGGTGACAATAGCAAAAGCAGACACGACTTCGACAGTGTCGCTGACCTACGAGCAGCAGAAACCAGCAGCAGTGGAGGGAAGGGCTGACACCACGACAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.461 A=NA C2=0.532
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]