HsaINT0054732 @ hg19
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone-lysine N-methyltransferase 1 [Source:HGNC Symbol;Acc:24650]
Coordinates
chr9:140669561-140671296:+
Coord C1 exon
chr9:140669561-140669704
Coord A exon
chr9:140669705-140671069
Coord C2 exon
chr9:140671070-140671296
Length
1365 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TTTTGTCCTCCCATTTTTAGGGT
3' ss Score
13.12
Exon sequences
Seq C1 exon
TTGGGCCGGTGCACAAACAGCGTGGTCAAGTATGAGCTGATGCGCCCCTCCAACAAGGCCCCGCTCCTCGTGCTGTGTGAAGACCACCGGGGCCGCATGGTGAAGCACCAGTGCTGTCCTGGCTGTGGCTACTTCTGCACAGCG
Seq A exon
GTAAGAGCCCAGTCCGGCAGCCTCTGAGTCCTCCGCAGGCTTTGCTGTCTGCTCACTGGTGCTGGTTCCTGTCCTGTGTCCACCTGCTGTCGGGTGGTCCAGCAGCTGGCCCAGGTCTGGTGTCCGTCTGGAGGTCTCCAGTGTTCACAAGCCCCTCACCACCCCTGTCGAGCCCCAGTGCCTTAGACACCTTCACCCCCAACCCCCATTTCCCTCCTACCGCCTGGAAACCGCTTTTGGAGATGACTAGGACGGTGTGACCTGGGCTTCCAGGCCAGAGGAGGGAAGTGAGGGTTGGGGGTGAAGGTGTCTAAGGCACTGGGGCTCGAGAGCAGTGGTGAGGGGCTTGTGACGCACTGGAGACTCCAGGTGGAGGCTGTACTGAGGACGTTCATCCCCCATGACAAGGGTGTACTGAGGACATTCACCCCCCATGATAAGGGTGTCCAGAGCACACAGCTCCTGGGAGAGGTGGCAGCACCTTGCTGTGCCCTGGGCTGTTTCTGCTGGGATCTTGGGTCATCAGTTACTTCAATGTCAAACATCTGTGCTCAGCCGTGCCCAGGGCCCCCCGAGAATGGGCTGCTTCCCTTTGGAGCTCCCCTGTGTGGGCATCCTCGTGCATGTAGGGTGTGTGTGTGTGTGTGTCTGTGCGCGCACACATCTGTGTGAGCCTCTGCCTGTAAGCGTCTGTCTGTGTGCGCCTGTGTGTGTGAGTGTTTGAGTGTGAGCTTCAGGCACCCAGAGATGCCCTGCTGCCCCTTTACGAACATGGGCCAAGAGCTTCCACTTTTGGGAGACTTTCTTTGGACTTCACACCTTGCATGTCCTCCCCATCTTCAAACATCCTTTTTTTGGTTCTGCTACATCTGTTTATCTCTGGCTTTCTGCAAGAAAATGCTGTTCTTACGGCTGTGTGCCCCTCCTCGAGGCTCACCTGGGTCGCCAAACCACATCTGCTGCGCACTGCTGGGCACTGAGGCAGCTCCACCTGCCTGATGCTGTGCCCTGAGGTGCTGTCGTCTGTCCCTGTCCCTATCCGCCCTTCAGAGTAGGGGCCTTCTGGGTCCTTCTTTAGGCCTTCTCTTTGCGGGCAGCCTCAGCTTTCCTGGGCCTAGGTGGGTTGGAGGCAGCCAAGTGACCTCTGTCTGGCTTCAGCTTCTTCTCTGTGGGGCGAGAGCACCACGGGAAGCATCGTTCCTCCTTCTTAACGATGCCTGGGGCCAAGACTGGACCCCACCCCGACCCATGGCTCACTCTGCAGACCGCCCGATGTGGGATGCGGTGCCAGTTTAGTAGTACTTTATTTTTCTAAATATTAACCCCAATTAAAACAAAAATTTTTTTTTGTCCTCCCATTTTTAG
Seq C2 exon
GGTAATTTTATGGAGTGTCAGCCCGAGAGCAGCATCTCTCACCGTTTCCACAAAGACTGTGCCTCTCGAGTCAATAACGCCAGCTATTGTCCCCACTGTGGGGAGGAGAGCTCCAAGGCCAAAGAGGTGACGATAGCTAAAGCAGACACCACCTCGACCGTGACACCAGTCCCCGGGCAGGAGAAGGGCTCGGCCCTGGAGGGCAGGGCCGACACCACAACGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090-EHMT1:NM_001145527:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTATGAGCTGATGCGCC
R:
CTGCCCGTTGTGGTGTCG
Band lengths:
346-1711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)