MmuINT0055964 @ mm9
Intron Retention
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24695050-24696299:-
Coord C1 exon
chr2:24696156-24696299
Coord A exon
chr2:24695277-24696155
Coord C2 exon
chr2:24695050-24695276
Length
879 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TTTCATTTTCATTTTTCCAGGGT
3' ss Score
10
Exon sequences
Seq C1 exon
TTGGGCCGGTGTACAAACAGCGTGGTCAAGTATGAGCTGATGCGCCCATCCAACAAAGCACCGCTCTTGGTGTTATGTGAAGACCATCGGGGTCGCATGGTGAAGCACCAGTGCTGTCCTGGCTGCGGCTACTTCTGCACGGCG
Seq A exon
GTAAGAGCCCAGCCCGCCTGCCGGGCTTCAAGAGTCTTCTGCAGAGACTCATTCCAGCACCGTACCCATATAGGGTCTATTCCATAAGCCCTTCACCATAGTTCTTGAGCTTTCTTACTATAGACAAATGACCTTGTGCCCTCAGTTTCCCTTGTTTTGTTGTGTGGATTTCTGTCTTGAGTATAGAGGAGGGCGTGCCTCCATCCTCTGTGCTCTGTTAGTTATCGCTGGGATCTTATCTCTGATGACTCTGTTCATGAGATACATGTGCATCCACCAGGCCCGTAGGACAGCTCTTCTCTTACGATGCTTCTGTCATTGCCTTCATGGACCGGTACCTTCAGATGTCCTGCTGCCCTCTGTGGCCTAGGCCACAAGCACCTGCTCTGAGGGCTTATCTTTGAGTTCTGTACCTGGTTTTCTTTCTAGACTTCCTTTTTGTGCTTCTGCCGAGAAAAAGAGAACTCTGAATTCCATTGTTTCTGGCTTTGCAAGAACAGCTGTTCTAATTGGTGCTCTAAATGCTAGTTTTTAAAATGGTCACCTTTGGACTGTGATTCGGTCTATCATTATATCATGGGGGCCTTCTAGACTATGTCTTGTACAGCTCTTGCTTGTTTAGAGTGGTCAGACTGAGGCCTCAGCTAGCTGGGTTACTGGGCATTGAAGATGGGTAGTGGTAGCTGTGAGATAATCTTTGGTGGCCTCTGCTTACATTGTGAGCTCTTTGTAAACTCAGTGTTTTGTTTCCCTCCTGTTGGTCACCAGGCCGTAAGTGGCTTCTACTCGCCTGAGCCTGAAAGGTTCAGTGGAGTTCCCTGTAATTCTGTGAATGTTATTCTGAGTTTTTAAAAATCACTTTCATTTTCATTTTTCCAG
Seq C2 exon
GGTAACTTCATGGAATGCCAGCCTGAGAGCAGCATCTCTCATCGTTTCCATAAGGACTGTGCCTCTCGAGTCAACAATGCCAGCTACTGTCCCCATTGTGGGGAAGAAGCTTCCAAGGCCAAAGAGGTGACCATAGCAAAAGCAGACACAACTTCCACAGTGACCCTAGCCCCTGGACAGGAGAAGAGCCTGGCTGCTGAAGGCAGGGCTGACACGACCACGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893-Ehmt1:NM_001109686:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.508
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGCCGGTGTACAAACAG
R:
CTTCAGCAGCCAGGCTCTTC
Band lengths:
346-1225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: