HsaINT0054732 @ hg38
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone lysine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24650]
Coordinates
chr9:137775109-137776844:+
Coord C1 exon
chr9:137775109-137775252
Coord A exon
chr9:137775253-137776617
Coord C2 exon
chr9:137776618-137776844
Length
1365 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TTTTGTCCTCCCATTTTTAGGGT
3' ss Score
13.12
Exon sequences
Seq C1 exon
TTGGGCCGGTGCACAAACAGCGTGGTCAAGTATGAGCTGATGCGCCCCTCCAACAAGGCCCCGCTCCTCGTGCTGTGTGAAGACCACCGGGGCCGCATGGTGAAGCACCAGTGCTGTCCTGGCTGTGGCTACTTCTGCACAGCG
Seq A exon
GTAAGAGCCCAGTCCGGCAGCCTCTGAGTCCTCCGCAGGCTTTGCTGTCTGCTCACTGGTGCTGGTTCCTGTCCTGTGTCCACCTGCTGTCGGGTGGTCCAGCAGCTGGCCCAGGTCTGGTGTCCGTCTGGAGGTCTCCAGTGTTCACAAGCCCCTCACCACCCCTGTCGAGCCCCAGTGCCTTAGACACCTTCACCCCCAACCCCCATTTCCCTCCTACCGCCTGGAAACCGCTTTTGGAGATGACTAGGACGGTGTGACCTGGGCTTCCAGGCCAGAGGAGGGAAGTGAGGGTTGGGGGTGAAGGTGTCTAAGGCACTGGGGCTCGAGAGCAGTGGTGAGGGGCTTGTGACGCACTGGAGACTCCAGGTGGAGGCTGTACTGAGGACGTTCATCCCCCATGACAAGGGTGTACTGAGGACATTCACCCCCCATGATAAGGGTGTCCAGAGCACACAGCTCCTGGGAGAGGTGGCAGCACCTTGCTGTGCCCTGGGCTGTTTCTGCTGGGATCTTGGGTCATCAGTTACTTCAATGTCAAACATCTGTGCTCAGCCGTGCCCAGGGCCCCCCGAGAATGGGCTGCTTCCCTTTGGAGCTCCCCTGTGTGGGCATCCTCGTGCATGTAGGGTGTGTGTGTGTGTGTGTCTGTGCGCGCACACATCTGTGTGAGCCTCTGCCTGTAAGCGTCTGTCTGTGTGCGCCTGTGTGTGTGAGTGTTTGAGTGTGAGCTTCAGGCACCCAGAGATGCCCTGCTGCCCCTTTACGAACATGGGCCAAGAGCTTCCACTTTTGGGAGACTTTCTTTGGACTTCACACCTTGCATGTCCTCCCCATCTTCAAACATCCTTTTTTTGGTTCTGCTACATCTGTTTATCTCTGGCTTTCTGCAAGAAAATGCTGTTCTTACGGCTGTGTGCCCCTCCTCGAGGCTCACCTGGGTCGCCAAACCACATCTGCTGCGCACTGCTGGGCACTGAGGCAGCTCCACCTGCCTGATGCTGTGCCCTGAGGTGCTGTCGTCTGTCCCTGTCCCTATCCGCCCTTCAGAGTAGGGGCCTTCTGGGTCCTTCTTTAGGCCTTCTCTTTGCGGGCAGCCTCAGCTTTCCTGGGCCTAGGTGGGTTGGAGGCAGCCAAGTGACCTCTGTCTGGCTTCAGCTTCTTCTCTGTGGGGCGAGAGCACCACGGGAAGCATCGTTCCTCCTTCTTAACGATGCCTGGGGCCAAGACTGGACCCCACCCCGACCCATGGCTCACTCTGCAGACCGCCCGATGTGGGATGCGGTGCCAGTTTAGTAGTACTTTATTTTTCTAAATATTAACCCCAATTAAAACAAAAATTTTTTTTTGTCCTCCCATTTTTAG
Seq C2 exon
GGTAATTTTATGGAGTGTCAGCCCGAGAGCAGCATCTCTCACCGTTTCCACAAAGACTGTGCCTCTCGAGTCAATAACGCCAGCTATTGTCCCCACTGTGGGGAGGAGAGCTCCAAGGCCAAAGAGGTGACGATAGCTAAAGCAGACACCACCTCGACCGTGACACCAGTCCCCGGGCAGGAGAAGGGCTCGGCCCTGGAGGGCAGGGCCGACACCACAACGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090:ENST00000460843:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.470
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTATGAGCTGATGCGCC
R:
CTGCCCGTTGTGGTGTCG
Band lengths:
346-1711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development