BtaINT0054892 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105459764-105460749:-
Coord C1 exon
chr11:105460606-105460749
Coord A exon
chr11:105459991-105460605
Coord C2 exon
chr11:105459764-105459990
Length
615 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TGTTGCTTTCCCATCTTTAGGGT
3' ss Score
11.54
Exon sequences
Seq C1 exon
CTGGGCAGGTGCACGAACAGCGTGGTGAAGCATGAGCTGATGCGTCCGTCCAGCAAGGCACCGCTGCTGGTGCTGTGTGAGGACCACCGGGGCCGGATGGTGAAGCACCAGTGCTGCCCCGGCTGCGGCTACTTCTGCACGGCC
Seq A exon
GTGAGTGCCGCCCGCCTCCCGGGCACGCCCAGCCCCTCCCCACTGCTCCTGGCGCTGCCCGGCAGGACCGCCTGCCCCGTGTTGCCACCTGCAGAGCCCCGGGCCGTCCTCCTCGGTGGCTCAGCCACAGGTGCTCCCAGGCCCTCTCCTGGGCTCACGGGCTCCACGTGGCCCTTCGTGCTCCCGGCCGAGAGCCTCTCTCCTGGGGCTTCTCCGGATGCCACGGCTCTGTGTCCTCCCAGTCCTCCACATCCTTCCATGCCTCTGCTGAAAGATGGCCCCGGGTCCCACTTTCTGCCCCAGAGCCCCGCCTGCGGCTGGGGGACTCTGCTGAGGGCTGTTGCCAGCTCTCAGGGCTGTGAGTCTGCTTCCCGGGTGTGTCCTCCGTGGGTCTCCTGTCGACCTGGTCTTATACATGGCTCACCCGCTGAGCAGCGTGGCGCAGAGCGAGGCGCGGGGGTGGGGATGCCCTCCGCTTCAAGCAGGGCGCAGGGCCACAGGCCTTCTCTCCTCCCCACGCCGGCTTCCTGCCCCACATGTGCCTGCACCTCGGGTTCACTTGCTTTTCTGCATTTTACTCCCAGTGAGAATGACTTGTTGCTTTCCCATCTTTAG
Seq C2 exon
GGTAATTTTATGGAATGTCAGCCTGAGAGCAGCATTTCTCATCGTTTCCACAAAGCCTGTGCCTCTCGAGTCAATAATGCCAGCTACTGTCCCCACTGTGGGGAGGAGACCTCCAAGGCCAAAGAGGTGACCATTGCAAAGGCAGACACGACGTCCACGGTGACCCTGGCCCCTGGGCAGGAGAAGAGCTGTGCAGCAGAGGGCAGGGCCGACACCACCACGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148:ENSBTAT00000016118:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGGTGCACGAACAG
R:
CCTGCCCTCTGCTGCACA
Band lengths:
349-964
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development