DreINT0061777 @ danRer10
Intron Retention
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28906488-28908281:-
Coord C1 exon
chr5:28908138-28908281
Coord A exon
chr5:28906697-28908137
Coord C2 exon
chr5:28906488-28906696
Length
1441 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TGCTGCTTTATGTAATTCAGGGG
3' ss Score
6.04
Exon sequences
Seq C1 exon
CTGAGTTTATGTCGGAAAGTGATCATGAAGCAGGAATTGATGCGTCCATCTCTGAGGATTCCACAGCTCGTACTGTGTGAGGATCATCGTGCAGGAATGGTGAAACACCAGAGCTGTCCGGGCTGTGGCTTCTTCTGCAGAGCT
Seq A exon
GTGAGTAAAAGATACAGGAATGGATCTGTAAGATTATTTAGGTTTTTAAAAGATGCTTTTATCAAGGTTGCCATATCTTTAAAATAAATAAACGTCTTTCTATTTATAGAATATGAATATTATTCATGACTATGAATACTTTCAATGTAGTATATTTTTTAAATTAAACTTATTCTGTTGATGGATTGTTCCAAAGTCATGATAATATCATAAAAATTTTTAACAATGTTAATTAATATTTTGTGTAACCCCCTAAATTTTCGGGATCCTTATCTTTCATTATCCTATTATGATCTTTATTTTTTATTAATCATGATCAACAGAGATATTTCTATATATTTTTTACATATTTTTAAACACAGCAGTTTTAATAACTAATTTCATTTGTCTTTGTCTTTGTCTTTTTTGTCTTTGTCATGATGACATGTGTAATATTTCTGAATACATAAAATCAAACAAGTTATTTTGCAGGATATGAGGTCAATTCTAGTAGCTTGGCTATTGGAAAATAATTGTAAAAGGAATAATTGTATAATAATTCTAAAAGGAAACCGTTAAAGAGGTGGTCCAGAGTTTGCTTTTAAGGCTTGGTTGTGTTTATAAGAAGCAAAGCAATGTGTGAAAATCACATTATTTTTTCTTGTATCTTACTTTGATAATATACTGCTACACAGCTAACAGGAAAACTACATATTTCCTAGTTCCTCTGAAAAGACCCGCCCTCAAGAGGCTCTGATTGGTCAGCTAACAAAATGTGATGTGATTCACAGATCAGCTCCACATGTCACACCCCTACAAGCACGCACTATTGCGCTGTGTAAATGGAGAAGCATTAGCTGAAGAGCACAAAGCTGAATCTCATGCCTGCTCTTTAAAATAAAATCTGACAAGTGTCCTTGACATATATTGGGTTTATAAGCATGTGTAAGTAATATATCTTTTGCGAGTTTGTTATTTGAGATGTAGAACGCAGAGAAAACAGCTGCATAAAGAGATACTGAAAGCATCCACATACGCTGATGATGATTGTGGCTGTTTGCAGCGGTTTGTCGGATAAATATGAATTTGTAGCTAAATTGTTAACTGTGCCAAACAGCATTTCCCGTTCTTTTCATCCTCGTTTGTGTCGTACGGCATTTTAGCTTTCTTTGCTATAACATTACAACGCCTCTGGCCATGCCTCTTCGCAGGGTGTGTGCACGTAACCTGAAGCATTTAGGACATCAGCCATATCATATTTTGTGATGTCCATTTAGAATATATTTGTAGTATTTATTATAGTCACTGAAATTCTGCATAATTTAAGAAGAATTTGTAAGGGTTGTCAGTGCAATTTAAGATGAAGCATTACTGTGTTCACCTTTTAATAGCTTAACTATACCTATATGCTCTGATAAACTTATACACTGCAAAGCTAATTATGCTGCTTTATGTAATTCAG
Seq C2 exon
GGGACATTTATGGAGTGTCAGCCAGATGGGAACATCTCTCACCGCTTCCACCGGAGCTGTGCATCTCTGATCAGAGGCCAGGTCTACTGCCCTCACTGCGGTGAGGAGGCTAGTCATGCTAAGGAGGTCACGATCCCCAAACCTGACTGTGTGGCTTCAGTGCCAACAGCTGCTGTGCCGGCACACAAGAGAGACAACGCCTTAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157:ENSDART00000126018:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAAAGTGATCATGAAGCAGG
R:
TCCATTAAGGCGTTGTCTCTCT
Band lengths:
342-1783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]