RnoEX0031257 @ rn6
Exon Skipping
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2012043-2021318:-
Coord C1 exon
chr3:2021173-2021318
Coord A exon
chr3:2013163-2013306
Coord C2 exon
chr3:2012043-2012269
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTTGTCTGCTTGCAGTTG
3' ss Score
9.17
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
GGCTGGCCAATGGTCCGGATGTGCTGGAGACGGATGGCCTCCATGAAGTGCCTCTCTGCAGCTGCCGCATGGAAACCCCCAAGAGCCGTGAGATCAGCACCCTGGCCAACAACCAGTGCATGGCCACTGAGAGCGTGGATCACGAA
Seq A exon
TTGGGCCGGTGTACAAACAGCGTGGTCAAGTATGAGCTGATGCGCCCTTCCAACAAAGCACCACTCTTGGTGCTGTGTGAAGACCATCGGGGTCGCATGGTGAAGCACCAGTGCTGTCCTGGCTGCGGCTACTTCTGCACGGCG
Seq C2 exon
GGTAACTTCATGGAATGTCAGCCTGAGAGCAGCATCTCTCATCGTTTCCATAAGGACTGTGCCTCTCGAGTCAACAATGCCAGCTACTGTCCCCATTGTGGGGAAGAGACTTCCAAGGCCAAAGAGGTGACCATAGCAAAAGCAGACACGACTTCCACAGTGACCCTGGCCCCTGGACAGGAGAAGAGCTTGGCTGCTGAGGGCAGGGCTGACACGACCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.000 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAAGTGCCTCTCTGCAG
R:
GCTATGGTCACCTCTTTGGCC
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]