DreEX6011309 @ danRer10
Exon Skipping
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28906488-28908741:-
Coord C1 exon
chr5:28908596-28908741
Coord A exon
chr5:28908138-28908281
Coord C2 exon
chr5:28906488-28906696
Length
144 bp
Sequences
Splice sites
3' ss Seq
GAGTTTCTTTCTTTCTCCAGCTG
3' ss Score
9.11
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GCTTACGGGAGGATAAAGAGAACATGGAAACTGATGACACGTTAGAGCCTCCACTGTGTAGCTGCCGCATGGAGACGCCAAAGAACCAGGATGTAGTCACACTGGCTGAGGGCAAGTGCATGGCTGTGGAGAGTGTTGATGGGAAG
Seq A exon
CTGAGTTTATGTCGGAAAGTGATCATGAAGCAGGAATTGATGCGTCCATCTCTGAGGATTCCACAGCTCGTACTGTGTGAGGATCATCGTGCAGGAATGGTGAAACACCAGAGCTGTCCGGGCTGTGGCTTCTTCTGCAGAGCT
Seq C2 exon
GGGACATTTATGGAGTGTCAGCCAGATGGGAACATCTCTCACCGCTTCCACCGGAGCTGTGCATCTCTGATCAGAGGCCAGGTCTACTGCCCTCACTGCGGTGAGGAGGCTAGTCATGCTAAGGAGGTCACGATCCCCAAACCTGACTGTGTGGCTTCAGTGCCAACAGCTGCTGTGCCGGCACACAAGAGAGACAACGCCTTAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTAGAGCCTCCACTGTGT
R:
CAGTCAGGTTTGGGGATCGTG
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]