BtaEX0012916 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020589 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3363]
Coordinates
chr26:17048735-17118247:+
Coord C1 exon
chr26:17048735-17048819
Coord A exon
chr26:17104566-17104693
Coord C2 exon
chr26:17118130-17118247
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTCTTTTGATTTTAGAAT
3' ss Score
9.79
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CTGAGACCGACCACAGCAAGCAGAGGCTGAAAAATAGAGCAAAGAGGAAGAAAACAAAAGCTGCCAGTTATGGAAGATAGAAGGG
Seq A exon
AATCTGAACTGAAGGTATTTTGCTCTAAAAACATACTGAGCATACTTGGTTTCTCCTGCATCATCGCTGTGATAGCATTGCTCGCTCTGGGGCTGACCCAGAACAAAGCACTGCCAGAAAATGTTAAG
Seq C2 exon
TTTGGGATTGTGCTGGATGCGGGCTCCTCTCATACGAGTTTGTACATCTATAGATGGCCGGCAGAGAAGGAGAATGACACGGGGGTGGTGACTCAGATAGAAGAATGCAAGCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020589-'0-3,'0-1,8-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
PF0115012=GDA1_CD39=PU(1.8=18.6)
C2:
PF0115012=GDA1_CD39=FE(8.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGACCGACCACAGCAAG
R:
TTTAAGCTTGCATTCTTCTATCTGAG
Band lengths:
202-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development