DreEX0030070 @ danRer10
Exon Skipping
Gene
ENSDARG00000045066 | entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-58]
Coordinates
chr12:30641307-30646069:-
Coord C1 exon
chr12:30645883-30646069
Coord A exon
chr12:30641513-30641640
Coord C2 exon
chr12:30641307-30641424
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCTTTATTCTCTCATTTCAGAAG
3' ss Score
8.69
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACGCACATAGGTGTCATTGACTGTTGCTCAAACAAGCTGCTCACTCGTATTAATAGGCAACAATTAAACGTGCAGGACTCGATAAACACTGCTTTGGTTGGTACTTACTTCACAAGCCGCGCTGACAGTCGCTGATACACACACACCGATCTCACCGGCAACAGATGCCCGGCGCACGTCCTGATGG
Seq A exon
AAGTAAAAGTCAAAAACCCATGGCACAGGCCGGTTGTCATCTTTCTGATGGCTGTTGTTGCCGTGGGGATTGTCATCATGGTATCCATTTCTGTTGTCCAGCACAAGCCTTTACCCCAAAAGTACAAG
Seq C2 exon
TATGGAATAGTCCTGGATGCCGGCTCCTCTCACACCTCTGTGTTTATCTATAAATGGCCAGCAGAGAAAGAGAACAACACAGGCATGGTACAGCAGCATCACACGTGCAATGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045066-'1-4,'1-2,2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
PF0115012=GDA1_CD39=PU(1.9=18.6)
C2:
PF0115012=GDA1_CD39=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAAACAAGCTGCTCACT
R:
TGCTGTACCATGCCTGTGTTG
Band lengths:
258-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]