MmuEX0016913 @ mm9
Exon Skipping
Gene
ENSMUSG00000048120 | Entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:MGI Symbol;Acc:MGI:102805]
Coordinates
chr19:40734260-40795064:+
Coord C1 exon
chr19:40734260-40734390
Coord A exon
chr19:40785653-40785780
Coord C2 exon
chr19:40794947-40795064
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTTGACTTTAGATT
3' ss Score
9.3
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
CTCTGAACCGTGAGTACCTCTCTCGCAGAAAGCCACCACAGCAAGCAGAGACAGCAAAAACAAAAAACACCCAAGACAGACGAGGGAAGAGGAAGGAAACAAAAAGCTGCCCCTTATGGAAGATATAAAGG
Seq A exon
ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG
Seq C2 exon
TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048120-'3-12,'3-11,9-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF0115012=GDA1_CD39=PU(1.9=18.6)
C2:
PF0115012=GDA1_CD39=FE(16.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAACCGTGAGTACCTCTCT
R:
TTGGCATTCCTCTAACTGCTGC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types