HsaEX0022525 @ hg19
Exon Skipping
Gene
ENSG00000138185 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:3363]
Coordinates
chr10:97515673-97599565:+
Coord C1 exon
chr10:97515673-97516012
Coord A exon
chr10:97582994-97583121
Coord C2 exon
chr10:97599448-97599565
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGCTTTTGGTTTTAGAGT
3' ss Score
10.1
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGGGAAGAAGGGAGAAAGAGAGAGAGATTTGAATATACATTGCTTCAAGGATGCAAAAAATTACAACCTGGAAAAGGCTTCGAGTAACTTTAGGAAAATGAGCTGCTGGACTCCTCAGTCAATCTGTCCTTTCTAGTCAATGAAAAAGACAGGGTTTGAGGTTCCTTCCGAAACGGGGCCGGCTAATTTAGCCCCTCCCACGAGCCCAAGGGTCTGTTATATCTCTGTTTCCTTGAGGACCTCTCTCACGGAGACGGACCACAGCAAGCAGAGGCTGGGGGGGGGAAAGACGAGGAAAGAGGAGGAAAACAAAAGCTGCTACTTATGGAAGATACAAAGG
Seq A exon
AGTCTAACGTGAAGACATTTTGCTCCAAGAATATCCTAGCCATCCTTGGCTTCTCCTCTATCATAGCTGTGATAGCTTTGCTTGCTGTGGGGTTGACCCAGAACAAAGCATTGCCAGAAAACGTTAAG
Seq C2 exon
TATGGGATTGTGCTGGATGCGGGTTCTTCTCACACAAGTTTATACATCTATAAGTGGCCAGCAGAAAAGGAGAATGACACAGGCGTGGTGCATCAAGTAGAAGAATGCAGGGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138185-'3-12,'3-8,6-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
PF0115012=GDA1_CD39=PU(1.9=18.6)
C2:
PF0115012=GDA1_CD39=FE(12.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGGGGCCGGCTAATTTA
R:
CTCCTTTTCTGCTGGCCACTT
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)