BtaEX0013034 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018581 | EPC2
Description
Bos taurus enhancer of polycomb homolog 2 (Drosophila) (EPC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192242]
Coordinates
chr2:47544005-47549724:-
Coord C1 exon
chr2:47549592-47549724
Coord A exon
chr2:47547299-47547490
Coord C2 exon
chr2:47544005-47544094
Length
192 bp
Sequences
Splice sites
3' ss Seq
AAAAATCATCATGTAAACAGCAC
3' ss Score
2.07
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
ATATCATTTAGGAGACTATGGTGGTGAAATCCTTAATGAAGTGAAGATCAATAGATCAGAAAAAGAATTATATACCACTCCAGCAACTCTTCATAATGGAAATCATCACAAAGTCCAAGAATGTAAAACTAAA
Seq A exon
CACCCGCATCATTTGTCTTTGAAAGAAGAGGCTTCTGATGTGGTTCGTCAAAAGAAGAAGTACCCAAAGAAGCCTAAAGCAGAGGCTGTGCTAACATCTCAACAGCCCACTCCTGAGACCTTGCCTGTGATCAATAAGAGTGACCTTAAGCAATATGACTTTCACAGCTCAGAGGAAGATGAATTTCCACAG
Seq C2 exon
GTACCGTCCCCAGCATCAGAACCCGAAGAAGAAAATGATCCTGATGGTCCCTGTGCTTTCAGGAGGCGGGCAGGATGCCAGTATTATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018581_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=0.812 C2=0.377
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTAGGAGACTATGGTGGTGA
R:
AGCATAATACTGGCATCCTGC
Band lengths:
220-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development