HsaEX0022715 @ hg19
Exon Skipping
Gene
ENSG00000135999 | EPC2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:24543]
Coordinates
chr2:149520239-149526809:+
Coord C1 exon
chr2:149520239-149520371
Coord A exon
chr2:149522524-149522715
Coord C2 exon
chr2:149526720-149526809
Length
192 bp
Sequences
Splice sites
3' ss Seq
AAAAATCGTCATGTAAACAGCAC
3' ss Score
2.19
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
ATACCATTTGGGAGACTATGGTGGTGAAATCCTTAATGAAGTAAAAATCAGTAGATCAGAAAAAGAGTTATATGCCACTCCAGCAACTCTTCATAATGGAAATCATCACAAAGTTCAAGAATGTAAAACTAAG
Seq A exon
CACCCTCATCATTTGTCTTTGAAAGAAGAGGCTTCTGATGTGGTTCGTCAAAAGAAGAAGTACCCAAAGAAGCCTAAAGCAGAGGCTTTGATAACATCTCAGCAACCCACTCCTGAGACATTGCCTGTGATCAATAAGAGTGACATTAAGCAATATGATTTTCACAGCTCAGATGAAGATGAATTTCCACAG
Seq C2 exon
GTATTGTCCCCAGTATCAGAACCGGAAGAAGAAAATGATCCTGATGGTCCCTGTGCTTTCAGAAGGCGGGCAGGATGCCAGTATTATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135999-'13-15,'13-13,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.511 A=0.680 C2=0.295
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGGGAGACTATGGTGGTG
R:
AGCATAATACTGGCATCCTGC
Band lengths:
220-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)