MmuEX0017058 @ mm10
Exon Skipping
Gene
ENSMUSG00000069495 | Epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278321]
Coordinates
chr2:49530011-49535344:+
Coord C1 exon
chr2:49530011-49530143
Coord A exon
chr2:49532044-49532235
Coord C2 exon
chr2:49535255-49535344
Length
192 bp
Sequences
Splice sites
3' ss Seq
AAAATTCGTCATGTAAACAGCAC
3' ss Score
2.32
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
ATATCATTTGGGAGACTATGGGGGTGAAATCCTTAATGAAGTGAAAGTTAATAGATCAGAAAAAGAGTTATATGCCAGTCCAGCAACCCTTCATAATGGAAATCATCACAAAGTTCAAGAATGTAAAACTAAG
Seq A exon
CACCCTCATCATTTGTCTTTGAAAGAAGAGGCTTCTGATGTGGTTCGTCAAAAGAAGAAGTACCCAAAGAAGCCTAAGGCAGAGGCTGGGATAGCCCCTCAGCAGCCCACTCCTGAGACATTGCCTGTGATCAATAAGAGTGACATTAAGCAATATGACTTTCAGAGCTCAGACGAAGATGAATTTCCACAG
Seq C2 exon
GTGCTGTCTCCAGCTTCAGAGGCTGAGGAGGAGAATGACCCTGACGGTTCCTGTGCTTTCAGAAGACGGGCAGGATGCCAGTATTACGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069495_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.548 A=0.891 C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGGAGACTATGGGGGTGA
R:
AGCGTAATACTGGCATCCTGC
Band lengths:
218-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types