GgaEX6043215 @ galGal3
Exon Skipping
Gene
ENSGALG00000012453 | EPC2
Description
NA
Coordinates
chr7:36377872-36379903:+
Coord C1 exon
chr7:36377872-36378004
Coord A exon
chr7:36379279-36379470
Coord C2 exon
chr7:36379814-36379903
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTATAACAAACAGCAT
3' ss Score
4.85
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATACCATTTGGGTGATTATGGAGGTGAAATTCTCAATGAAGTGAAGCTTAACAGACCTGAAAAAGAGATGAGCACAGCCGCATCCACTCTTCATAATGGAAATCATCACAAAGTTCCAGAATGTAAAATTAAG
Seq A exon
CATCCTCATCATTCATCTCTAAAGGAGGAGATATCAGATGTTGTACGTCAGAAGAAGAAGTATCTGAAGAAACCGAAAATGGAGTGTGTGGTAACTGCTCAACAGCCCTCTGCTGAGCCCTTGCCTGTTATCAACAAGAGTGATATCAAGCAGTATGACTTCCACAGCTCAGATGAAGATGAGTTCCCGCAG
Seq C2 exon
GTACCCTCACCGGTATCAGAAGCAGAAGAGGAAAATGATCCTGATGGACCTTGTGCTTTCAGGAGAAGAGCAGGATGCCAGTATTATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012453-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=0.516 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGGGTGATTATGGAGGTGA
R:
AGCATAATACTGGCATCCTGCT
Band lengths:
220-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]