BtaEX0013414 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50930905-50938992:+
Coord C1 exon
chr3:50930905-50930979
Coord A exon
chr3:50937310-50937435
Coord C2 exon
chr3:50938849-50938992
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCTCCTAATGTAGATG
3' ss Score
9.07
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCATATTCTTTAGTGGATCGTGAGGTTGGTTACTGTCAAGGAAGTGCTTTTATAGTTGGATTGCTGCTTATGCAG
Seq A exon
ATGCCAGAAGAAGAAGCTTTCTGTGTATTTGTTAAATTAATGCAAGATTATAGACTTCGTGAACTTTTTAAACCAAGTATGGCAGAATTAGGCCTTTGTATGTACCAGTTTGAATGCATGATACAG
Seq C2 exon
GAGCACCTTCCAGAGCTCTTTGTGCATTTTCAGTCTCAGAGTTTTCATACCTCAATGTATGCATCATCATGGTTTCTGACAATCTTCCTTACAACTTTTCCACTACCAATTGCAACAAGGATATTTGATATCTTTATGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363-'12-9,'12-7,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
PF0056613=RabGAP-TBC=FE(20.2=100)
C2:
PF0056613=RabGAP-TBC=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATATTCTTTAGTGGATCGTGAGGT
R:
TCAAATATCCTTGTTGCAATTGGT
Band lengths:
203-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development