MmuEX7002942 @ mm10
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107816774-107819678:-
Coord C1 exon
chr5:107819604-107819678
Coord A exon
chr5:107818889-107819014
Coord C2 exon
chr5:107816774-107816917
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGTTATTTTTTTTAAATAGATG
3' ss Score
8.47
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCATACTCCTTAGTGGACCGTGAGGTTGGTTACTGTCAGGGCAGTGCTTTCATCGTTGGATTGTTGCTGATGCAG
Seq A exon
ATGCCAGAAGAAGAGGCTTTTTGTGTATTTGTTAAATTAATGCAAGACTACAGACTTCGTGAACTATTTAAGCCAAGTATGGCGGAATTGGGCCTTTGTATGTACCAGTTTGAATGTATGATACAG
Seq C2 exon
GAGTATCTTCCGGAACTCTTTGTACATTTTCAATCTCAGAGTTTTCATACGTCAATGTATGCATCATCCTGGTTCCTGACAATCTTTCTTACAACTTTCCCACTACCAATTGCGACAAGGATATTTGACATCTTTATGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-'32-29,'32-28,34-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
PF0056613=RabGAP-TBC=FE(20.2=100)
C2:
PF0056613=RabGAP-TBC=FE(23.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATACTCCTTAGTGGACCGTG
R:
AAAGATGTCAAATATCCTTGTCGCA
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types