GgaEX1023238 @ galGal3
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
NA
Coordinates
chr8:14769495-14771038:+
Coord C1 exon
chr8:14769495-14769569
Coord A exon
chr8:14770173-14770298
Coord C2 exon
chr8:14770895-14771038
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTATTTCTGATACAGATG
3' ss Score
8.76
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GCTTATTCTTTGGTGGATCGTGAAGTTGGATACTGTCAAGGAAGTGCTTTTATTGTTGGATTATTACTTATGCAG
Seq A exon
ATGCCGGAAGAAGAAGCATTCTGTGTGTTTGTTAAATTAATGCAGGATTACAGACTACGAGAACTCTTTAAACCAAGCATGGCTGAGCTGGGCCTTTGTATGTACCAGTTTGAGTGCATGATACAG
Seq C2 exon
GAGCATCTTCCAGAACTTTATGTGCACTTTCAGTCTCAGAGTTTCCACACTTCTATGTATGCATCATCATGGTTTTTAACTATATTTCTTACAACTTTTCCACTACCAATTGCAACAAGAATATTTGATATCTTTATGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
PF0056613=RabGAP-TBC=FE(20.2=100)
C2:
PF0056613=RabGAP-TBC=FE(23.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTATTCTTTGGTGGATCGTGA
R:
CAAATATTCTTGTTGCAATTGGTAGT
Band lengths:
202-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]