RnoEX0033403 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2945983-2952699:+
Coord C1 exon
chr14:2945983-2946057
Coord A exon
chr14:2950533-2950658
Coord C2 exon
chr14:2952556-2952699
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCTTTTTAAAATAGATG
3' ss Score
7.31
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCGTACTCCTTAGTGGACCGCGAGGTTGGCTACTGTCAGGGCAGTGCTTTCATAGTTGGACTGCTGCTTCTGCAG
Seq A exon
ATGCCAGAAGAAGAAGCTTTTTGCGTATTTTTTAAATTAATGCAAGACTACCGACTTCGTGAACTGTTTAAGCCAAGTATGGCAGAGTTGGGCCTGTGCATGTACCAGTTTGAATGCATGATACAG
Seq C2 exon
GAGTATCTTCCAGAGCTCTTTGTACATTTTCAGTCTCAGAGTTTCCATACATCAATGTATGCATCATCCTGGTTCCTGACTATCTTTCTTACAACTTTCCCACTACCAATTGCAACAAGGATATTTGACATCTTTATGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'28-24,'28-22,30-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
PF0056613=RabGAP-TBC=FE(20.2=100)
C2:
PF0056613=RabGAP-TBC=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTACTCCTTAGTGGACCGC
R:
AAAGATGTCAAATATCCTTGTTGCA
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]