BtaEX0013419 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50938849-50940233:+
Coord C1 exon
chr3:50938849-50938992
Coord A exon
chr3:50939941-50940030
Coord C2 exon
chr3:50940136-50940233
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTATAATTTGATTCTTCAGGGT
3' ss Score
8.79
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAGCACCTTCCAGAGCTCTTTGTGCATTTTCAGTCTCAGAGTTTTCATACCTCAATGTATGCATCATCATGGTTTCTGACAATCTTCCTTACAACTTTTCCACTACCAATTGCAACAAGGATATTTGATATCTTTATGTCTGAG
Seq A exon
GGTTTAGAAATAGTGTTTCGGGTAGGATTAGCGCTTCTTCAGATGAATCAGGCAGAACTGATGCAACTCGACATGGAAGGGATGTTACAG
Seq C2 exon
CACTTTCAGAAGGTCATTCCACATCAGTTTGATGGTGGTCCAGACAAATTAATCCAGGCAGCTTACCAAGTCAAGTATAACTCTAAAAAAATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.2=100)
A:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCAGAGCTCTTTGTGCA
R:
TCTGGACCACCATCAAACTGA
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development