MmuEX1009760 @ mm10
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107815611-107816917:-
Coord C1 exon
chr5:107816774-107816917
Coord A exon
chr5:107815802-107815891
Coord C2 exon
chr5:107815611-107815708
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATCTAATTTGTTTCATCAGGGT
3' ss Score
8.47
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGTATCTTCCGGAACTCTTTGTACATTTTCAATCTCAGAGTTTTCATACGTCAATGTATGCATCATCCTGGTTCCTGACAATCTTTCTTACAACTTTCCCACTACCAATTGCGACAAGGATATTTGACATCTTTATGTCTGAG
Seq A exon
GGTTTGGAAATAGTGTTTCGAGTAGGATTAGCGCTTCTTCAGATGAATCAGGCAGAATTAATGCAACTTGACATGGAAGGGATGTTACAG
Seq C2 exon
CACTTTCAGAAGGTCATTCCACATCAGTTTGATGGTGGCCCAGAAAAATTAATCCAGTCAGCTTACCAAGTCAAATACAACTCAAAAAAAATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-'35-33,'35-32,38-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.2=100)
A:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
C2:
PF138511=GAS=PU(16.5=54.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAATGTATGCATCATCCTGG
R:
TGACTTGGTAAGCTGACTGGA
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types