GgaEX1023240 @ galGal3
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
NA
Coordinates
chr8:14770895-14772339:+
Coord C1 exon
chr8:14770895-14771038
Coord A exon
chr8:14772057-14772146
Coord C2 exon
chr8:14772242-14772339
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTTTAACTTCTGTTTACAGGGT
3' ss Score
9.1
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGCATCTTCCAGAACTTTATGTGCACTTTCAGTCTCAGAGTTTCCACACTTCTATGTATGCATCATCATGGTTTTTAACTATATTTCTTACAACTTTTCCACTACCAATTGCAACAAGAATATTTGATATCTTTATGTCTGAG
Seq A exon
GGTTTAGAGATAGTATTTCGAGTAGGTTTAGCACTACTTCAGACAAACCAAGCAGAATTGCTGCAACTTGACATGGAAGGGATGTTACAG
Seq C2 exon
CACTTTCAAAAGGTCATTCCACATCAGTTTGACAGTGGTCCAGACAAATTAATCCAAGCATCTTACCAAGTCAAATACAATGCAAAAAAGATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935-'12-9,'12-8,13-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.2=100)
A:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCACTTTCAGTCTCAGAGT
R:
TGTCTGGACCACTGTCAAACTG
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]