RnoEX6041415 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2952556-2953807:+
Coord C1 exon
chr14:2952556-2952699
Coord A exon
chr14:2953528-2953617
Coord C2 exon
chr14:2953710-2953807
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATTTAATTTGTTTCATCAGGGT
3' ss Score
8.31
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGTATCTTCCAGAGCTCTTTGTACATTTTCAGTCTCAGAGTTTCCATACATCAATGTATGCATCATCCTGGTTCCTGACTATCTTTCTTACAACTTTCCCACTACCAATTGCAACAAGGATATTTGACATCTTTATGTCTGAG
Seq A exon
GGTTTAGAAATAGTGTTTCGAGTAGGATTAGCACTTCTTCAGATGAATCAGGCAGAATTAATGCAACTTGACATGGAAGGGATGTTACAG
Seq C2 exon
CACTTCCAGAAGGTCATTCCACATCAGTTTGATGGTGGCCCAGAAAAATTAATCCAGTCAGCTTACCAAGTCAAATACAACTCAAAAAAAATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'32-26,'32-25,33-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.2=100)
A:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAATGTATGCATCATCCTGGT
R:
TGACTTGGTAAGCTGACTGGA
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]